package edu.polsl.bio.tools.str;

import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.io.Serializable;

/**
 * //todo class description
 * <p/>
 * Created on: Jun 11, 2011 11:11:34 PM <br/>
 * <a href="http://www.polsl.pl">www.polsl.pl</a>
 *
 * @author lukasz.olczak@polsl.pl
 */
public class StrMatcherConfig implements Serializable {
  
  private boolean useLeftFlank;

  private boolean useRightFlank;

  private int cutoff;

  private int match;

  private int mismatch;

  private int indel;

  public boolean isUseLeftFlank() {
    return useLeftFlank;
  }

  public void setUseLeftFlank(boolean useLeftFlank) {
    this.useLeftFlank = useLeftFlank;
  }

  public boolean isUseRightFlank() {
    return useRightFlank;
  }

  public void setUseRightFlank(boolean useRightFlank) {
    this.useRightFlank = useRightFlank;
  }

  public int getCutoff() {
    return cutoff;
  }

  public void setCutoff(int cutoff) {
    this.cutoff = cutoff;
  }

  public int getMatch() {
    return match;
  }

  public void setMatch(int match) {
    this.match = match;
  }

  public int getMismatch() {
    return mismatch;
  }

  public void setMismatch(int mismatch) {
    this.mismatch = mismatch;
  }

  public int getIndel() {
    return indel;
  }

  public void setIndel(int indel) {
    this.indel = indel;
  }
  
}
